Mastering Quarto CLI: From Authoring to Publishing

Dates

18th-19th September 2025

To foster international participation, this course will be held online

 

Course overview

 

This workshop offers a comprehensive, hands-on exploration of the Quarto ecosystem, designed to equip participants with the skills needed to create reproducible documents and interactive publications. Through a series of interactive sessions, attendees will learn fundamental Markdown techniques, integrate executable code in various programming languages, and experiment with different output formats. The agenda covers installation, authoring essentials, code embedding, publishing strategies, and advanced formatting techniques to help learners develop polished, professional projects.  

Workshop Objectives

  • Familiarise participants with the Quarto ecosystem.
  • Empower attendees to create reproducible documents and interactive publications.
  • Guide learners through embedding code, adjusting outputs, and publishing projects.
  • Encourage hands‑on practice with interactive sessions.

Prerequisites

Prior to the workshop, please ensure you have the following installed on your computer.  

  • Quarto CLI 1.7.26 or higher: https://quarto.org/docs/get-started 
  • R 4.5.* or higher: https://cran.r-project.org
  • Python 3.13.* or higher: https://www.python.org/downloads/
  • Julia 1.11.* or higher: https://julialang.org/downloads/

Session content

Day 1: 18.09 - 2-5 PM Berlin time

  • Introduction & Setup
  • Authoring Essentials
  1. Markdown Fundamentals 
  2. Incorporating Media & Formatting Tools
  3. Hands‑On Exercise
  • Embedding Computations & Code
  1. Integrating Executable Code
  2. Execution Options & Caching
  3. Practical Exercise


Day 2: 19.09 -2-5 PM Berlin time

  • Formats & Projects
  1. Exploring Formats
  2. Project Structures
  3. Hands‑On Exercise
  • Publishing 
  1. Publishing Options
  2. Deployment Workflow
  3. Interactive Exercise
  • Advanced Formatting & Branding 
  1. Advanced Formatting
  2. Brand Identity
  3. Hands‑On Exercise
  • Closing & Next Steps

 

Instructor

 

 

Dr. Mickaël CANOUIL  

 

His research has contributed to understanding the genetic and molecular mechanisms underlying metabolic diseases, with publications in leading journals. Currently, he works as a consultant in biostatistics, applying my expertise to diverse projects in multi-omics and data analysis. He is also deeply involved in the Quarto ecosystem, developing extensions and tools that enhance reproducibility and scientific communication. His contributions, including Quarto Wizard and various Quarto extensions, aim to streamline workflows for researchers and data scientists.

 


COst overview

 

Package 1

 

 

 

280 €

 

 

 

 

 

 

 

 

 


Cancellation Policy:

 

> 30  days before the start date = 30% cancellation fee

< 30 days before the start date= No Refund.

 

Physalia-courses cannot be held responsible for any travel fees, accommodation or other expenses incurred to you as a result of the cancellation.