Monday - 2 -9 pm Berlin time

 

• Introduction to Unix

 

• Introduction to NGS data

 

• Mapping NGS reads to a reference genome

 

 

 

 

Tuesday - 2 -9 pm Berlin time

 

• Variant calling

 

• Filtering and handling VCFs

 

• Mapping quality and quality control

 

 

 

 

Wednesday - 2 -9 pm Berlin time

 

• Population structure (PCA, ADMIXTURE)

 

• Inference of admixture: (D statistics)

 

• Plotting and visualising data with R

 

 

 

 

Thursday - 2 -9 pm Berlin time

 

• Demographic history inference (fastsimcoal2)

 

 

 

 

Friday - 2 -9 pm Berlin time

 

• Genome scans for divergent selection and introgression (pi, F_st, d_xy, f_d)

 

• Checking for genes in regions of interest